PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03561.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 75aa    MW: 8551.64 Da    PI: 8.4672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03561.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.4e-0727572055
                      AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             r p      +r++l ++ t+e+A  a+++a+ +l+g
  Rsa1.0_03561.1_g00003.1 27 RNP-----GARVWLRTYETPEDAVVAYDRAAFQLKG 57
                             344.....49**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.43165IPR001471AP2/ERF domain
SMARTSM003801.8E-41971IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-102866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-142966IPR001471AP2/ERF domain
CDDcd000185.69E-143067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MSGFDYSDLI SSPDSVNNGV NPPVFYRNPG ARVWLRTYET PEDAVVAYDR AAFQLKGSKA  60
KLNFPHLIRM CERRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023885e-32AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAF3250895e-32AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBankAF3705405e-32AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0724715e-32AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0883875e-32AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence.
GenBankCP0026855e-32CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142287.13e-20PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013634474.13e-20PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013665711.13e-20PREDICTED: ethylene-responsive transcription factor 13
RefseqXP_013725494.13e-20PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K15e-21ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078GDM44e-20A0A078GDM4_BRANA; BnaC04g49870D protein
TrEMBLA0A078GZB83e-20A0A078GZB8_BRANA; BnaA04g25900D protein
TrEMBLA0A0D3C6A93e-20A0A0D3C6A9_BRAOL; Uncharacterized protein
TrEMBLM4F9673e-20M4F967_BRARP; Uncharacterized protein
STRINGBra037630.1-P9e-20(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-22ethylene-responsive element binding factor 13